Section: Software

Protein sequence and structure

Participants : Rumen Andonov [contact] , François Coste, Andres Burgos, Pavel Senin.

• A_purva: Scoring similarities between proteins. A_purva is a Contact Map Overlap maximization (CMO) solver. Given two protein structures represented by two contact maps, A_purva computes the amino-acid alignment which maximizes the number of common contacts.

  http://apurva.genouest.org

• Protomata learner: fine characterization of protein families See first section above.